Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015924432.1_cds_XP_016472789.1_64988
CDS Infomation

[gene=LOC107794774] [db_xref=GeneID:107794774] [protein=jasmonic acid-amido synthetase JAR1-like] [protein_id=XP_016472789.1] [location=join(39783..40108,40678..40779,41077..41468,42118..42567,43717..44255)] [gbkey=CDS]
Sequence

ATGGAACCAACAGAGGCCACTTACAATGGCAATGGTGACACCCAAATAATCAGTTGGTTC
GAAGAAACTACCGAGAACGTCGCCGCTGTTCAGCGGCAGACGCTTCGCCGGATTCTTGAA
CTCAACCATGGTGTTGAATGTCTCAAGAAATGGCTTGGAAATATTAGACTTCAAGATATT
ATGAATGAAAATGCATTGGAATCACTCTTTGCAACTATGGTCCCTCTTGTTTCTCATGCA
GATTTTGAGCCTTATATTCAGAGAATTGCTGATGGTGAAACAGCTCCTCTTATCACTCAA
GAACCAATCACAACTCTGTCCTTAAGTTCTGGCACCACAGAGGGAAGACAAAAGTTTGTG
CCTTTTACTCACCATAGCTCCCAAACTACTCTCCAAATTTTCAAGTTAGCAGCAGCTTAC
AGATCAAGGATTTATTCAATAAGAGGAGGAGGAAAAGTTCTTGAATTCATATACAGCAGC
AAACAATATAAAACAAAAGGGGGACTAATAGCAGGAACAGCTACAACTCATTATTATGCT
AGTAAGGAATTCAAGATTAAACAGCAAGACACAAAGTCTTTTACTTGCAGCCCTGAGGAA
GTCATTTCAAGTGGAGATTATAAACAATCTACATATTGTCACCTCCTTCTTGGCTTGTAT
TTTTCTGAGGAAGTGGAATTTGTGACCTCAACTTTTGCATATAGCATTGTTCAAGCATTC
AGATCATTTGAAGAGCTGTGGAAAGAATTATGTCATGATATTAGGGAAGGCACTCTTAGT
TCAAGAATCAACATAACTAAAGTCCGAAACGCCGTCTTAGGTATTACTTTGCCAAATCCA
GAGTTGGCTTCAAGAATTGAATCAATTTGTGAGGAAGTAGAAAGGGAAGATTGGCTTAGC
ATAATTCCAAGATTATGGCCAAATGCTAAGTATGTTTACTCAATAATGACTGGCTCAATG
CAACCATATTTAACAAAACTGAGGCATTATGCTGGAGAATTGCCTTTGGTGAGTGCTGAT
TATGGGTCTACAGAGAGTTGGATTGGAGTGAATGTGGAACCTTCATATCCACCAGAGAAA
GTTACTTTTGCAGTAATACCCACTTTTGCTTACTTTGAATTCATACCACTACATAGAACC
AAGTCACAAAATTACAATAATAGCCAAGATACCAATCTAGCCACTGATGACTTTATAGAA
GATGAGCCAGTTCCCTTATCTCAAGTCAAGATTGGACAAGAATATGAGATTGTCCTCACC
ACTTTTACAGGTCTTTATCGGTATAGACTAGGGGATGTAGTAGAAGTGGCCGGTTTTCAC
GGGAAGACCCCTAGACTCAACTTCATATGTAGGAGAAAGCTGATACTGACAGTAAATATC
GATAAGAACACCGAGAAAGACCTCCAGTTAGTGGTGGAGAGAGGTTCACAGATCCTAAGT
AAATCAAGAGCTGAGCTAGTTGATTTCACAAGTCATGCAAATGTAGCAAAAAGACCAGGC
CATTATGTGATCTATTGGGAAATCAAAGGAGAAGTTGAAGAAAAAGTTTTAGGAGAATGT
TGTAGGGAAATGGATGCTTCTTTTGTGGATCATGGATATGTTGTATCAAGAAAAACAAAT
TCAATTGGACCATTGGAACTTTGCATTGTGGAGAGAGGTACTTTTAAGAAGATTTTGGAA
TATTTCATAGGAAATGGAGCAGCATTGAGCCAGTTTAAAACTCCTAGATGTACTAGCAAC
CAAGTTCTATTGAGAATTCTCAATGTTTGTACCATTAAAAGGGTTTATAGTACAGCCTAT
GGTTTATAA

Peptide Sequence

PEP ID

XP_016472789.1
PEP Infomation

PREDICTED: jasmonic acid-amido synthetase JAR1-like [Nicotiana tabacum]
Sequence

MEPTEATYNGNGDTQIISWFEETTENVAAVQRQTLRRILELNHGVECLKKWLGNIRLQDI
MNENALESLFATMVPLVSHADFEPYIQRIADGETAPLITQEPITTLSLSSGTTEGRQKFV
PFTHHSSQTTLQIFKLAAAYRSRIYSIRGGGKVLEFIYSSKQYKTKGGLIAGTATTHYYA
SKEFKIKQQDTKSFTCSPEEVISSGDYKQSTYCHLLLGLYFSEEVEFVTSTFAYSIVQAF
RSFEELWKELCHDIREGTLSSRINITKVRNAVLGITLPNPELASRIESICEEVEREDWLS
IIPRLWPNAKYVYSIMTGSMQPYLTKLRHYAGELPLVSADYGSTESWIGVNVEPSYPPEK
VTFAVIPTFAYFEFIPLHRTKSQNYNNSQDTNLATDDFIEDEPVPLSQVKIGQEYEIVLT
TFTGLYRYRLGDVVEVAGFHGKTPRLNFICRRKLILTVNIDKNTEKDLQLVVERGSQILS
KSRAELVDFTSHANVAKRPGHYVIYWEIKGEVEEKVLGECCREMDASFVDHGYVVSRKTN
SIGPLELCIVERGTFKKILEYFIGNGAALSQFKTPRCTSNQVLLRILNVCTIKRVYSTAY
GL

Transcript Sequence

Gene sequence data has not been registered.